CompuCell3D

@UCJWJZHM_1QsY6mO6bpkqacw - 306 subscribers

This channel contains tutorials on using the open-source, multicell virtual-tissue simulation software package CompuCell3D, as well as lectures and videos illustrating its application to a wide variety of biomedical problems.

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CC3D WS 2025: Module 5.2.3 Mesothelial Colonization by Ovarian Cancer Cells, Bharat Vivan (Aug 01)

CC3D WS 2025: Module 5.2.3 Mesothelial Colonization by Ovarian Cancer Cells, Bharat Vivan (Aug 01) CompuCell3D

226 views - 8 months ago

CC3D WS 2025: Module 4.2.1 Germinal Center Response Model, Dr. Qiang Zhang (Guest Presenter) July 31

CC3D WS 2025: Module 4.2.1 Germinal Center Response Model, Dr. Qiang Zhang (Guest Presenter) July 31 CompuCell3D

57 views - 8 months ago

CompuCell3D WS 2025: 4.2.3: Neural Tube Defects and Virtual Embryo [Job Berkhout] July 31, 2025

CompuCell3D WS 2025: 4.2.3: Neural Tube Defects and Virtual Embryo [Job Berkhout] July 31, 2025 CompuCell3D

70 views - 8 months ago

CompuCell3D WS 2025: 0.3: Python Dictionaries, Object-Oriented Programming [H Fennell] July 19, 2025

CompuCell3D WS 2025: 0.3: Python Dictionaries, Object-Oriented Programming [H Fennell] July 19, 2025 CompuCell3D

44 views - 9 months ago

CompuCell3D WS 2025: 0.2: Sequences & Modeling in Python [Hayden Fennell] July 19, 2025

CompuCell3D WS 2025: 0.2: Sequences & Modeling in Python [Hayden Fennell] July 19, 2025 CompuCell3D

72 views - 9 months ago

CompuCell3D WS 2025: 0.1: Python Basics [Hayden Fennell] July 19, 2025

CompuCell3D WS 2025: 0.1: Python Basics [Hayden Fennell] July 19, 2025 CompuCell3D

88 views - 9 months ago

New Simulation Wizard Settings - CompuCell3D - Tutorial

New Simulation Wizard Settings - CompuCell3D - Tutorial CompuCell3D

65 views - 9 months ago

Using Player - Tips and Ticks - CompuCell3D - Tutorial

Using Player - Tips and Ticks - CompuCell3D - Tutorial CompuCell3D

131 views - 10 months ago

Using Twedit - Tips and Tricks - CompuCell3D - Tutorial

Using Twedit - Tips and Tricks - CompuCell3D - Tutorial CompuCell3D

110 views - 11 months ago

Installation of CompuCell3D via Conda - Tutorial

Installation of CompuCell3D via Conda - Tutorial CompuCell3D

302 views - 1 year ago

CompuCell3D: How to Take Screenshots Automatically

CompuCell3D: How to Take Screenshots Automatically CompuCell3D

161 views - 2 years ago

CC3D Workshop 4.2: Embryonic Segmentation and Links

CC3D Workshop 4.2: Embryonic Segmentation and Links CompuCell3D

290 views - 5 years ago

CC3D Workshop 4.1: Delta-Notch Models

CC3D Workshop 4.1: Delta-Notch Models CompuCell3D

158 views - 5 years ago

CC3D Workshop 3.1: Implementing the Viral Infection Model Part 5

CC3D Workshop 3.1: Implementing the Viral Infection Model Part 5 CompuCell3D

70 views - 5 years ago

CC3D Workshop 2.4: Implementing The Viral Infection Model Part 4

CC3D Workshop 2.4: Implementing The Viral Infection Model Part 4 CompuCell3D

80 views - 5 years ago

CC3D Workshop 4.0b: How does CC3D does calculations

CC3D Workshop 4.0b: How does CC3D does calculations CompuCell3D

108 views - 5 years ago

CC3D Workshop 4.0: Day 4 Welcome

CC3D Workshop 4.0: Day 4 Welcome CompuCell3D

104 views - 5 years ago

CC3D Workshop 3.5: How CC3D does Calculations and Introduction to Cell Division

CC3D Workshop 3.5: How CC3D does Calculations and Introduction to Cell Division CompuCell3D

129 views - 5 years ago

CC3D Workshop 2.3: Implementing the Viral Infection Model — Part 3: Adding Immune Cells

CC3D Workshop 2.3: Implementing the Viral Infection Model — Part 3: Adding Immune Cells CompuCell3D

55 views - 5 years ago

CC3D Workshop 2.2: ODE to Spatial - Spatializing the Virus Diffusion Solver

CC3D Workshop 2.2: ODE to Spatial - Spatializing the Virus Diffusion Solver CompuCell3D

85 views - 5 years ago

CC3D Workshop 2.1b – PART 2: Implementing the Viral Infection Model: Infection and Type Transitions

CC3D Workshop 2.1b – PART 2: Implementing the Viral Infection Model: Infection and Type Transitions CompuCell3D

76 views - 5 years ago

CC3D Workshop 3.0: Day 3 Welcome

CC3D Workshop 3.0: Day 3 Welcome CompuCell3D

102 views - 5 years ago

CC3D Workshop 2.1a: Implementing the Viral Infection Model in CC3D—Part 2

CC3D Workshop 2.1a: Implementing the Viral Infection Model in CC3D—Part 2 CompuCell3D

104 views - 5 years ago

CC3D Workshop 1.6: Implementing the Viral Infection Model in CC3D Part I

CC3D Workshop 1.6: Implementing the Viral Infection Model in CC3D Part I CompuCell3D

144 views - 5 years ago

CC3D Workshop 1.5b - Building an ODE Viral Infection Model in Tellurium

CC3D Workshop 1.5b - Building an ODE Viral Infection Model in Tellurium CompuCell3D

146 views - 5 years ago

CC3D Workshop 2.0: Welcome and Setup

CC3D Workshop 2.0: Welcome and Setup CompuCell3D

145 views - 5 years ago

Day 2 Part 1 - Object Oriented Programming

Day 2 Part 1 - Object Oriented Programming CompuCell3D

36 views - 5 years ago

Day 2 part 2 - Python classes and Mechanica

Day 2 part 2 - Python classes and Mechanica CompuCell3D

26 views - 5 years ago

CC3D Workshop 1.5a - Building an ODE Viral Infection Model in Tellurium

CC3D Workshop 1.5a - Building an ODE Viral Infection Model in Tellurium CompuCell3D

186 views - 5 years ago

CC3D Workshop 1.4 - Exploring a COVID-19 Simulation

CC3D Workshop 1.4 - Exploring a COVID-19 Simulation CompuCell3D

114 views - 5 years ago

CC3D Workshop 1.2 - Adressiong biomedical problems using CC3D

CC3D Workshop 1.2 - Adressiong biomedical problems using CC3D CompuCell3D

207 views - 5 years ago

CC3D Workshop 1.3 Tissue-Level COVID-19 Simulation

CC3D Workshop 1.3 Tissue-Level COVID-19 Simulation CompuCell3D

158 views - 5 years ago

CC3D Workshop 1.1: Running CC3D, Core CC3D Tools—Twedit++ and Player

CC3D Workshop 1.1: Running CC3D, Core CC3D Tools—Twedit++ and Player CompuCell3D

449 views - 5 years ago

CC3D Workshop 1.0: Welcome and Setup

CC3D Workshop 1.0: Welcome and Setup CompuCell3D

417 views - 5 years ago

Twedit++ - generate simulation that implements cell growth and mitosis

Twedit++ - generate simulation that implements cell growth and mitosis CompuCell3D

437 views - 5 years ago

Twedit++ - change membrane fluctuation amplitude for individual cells

Twedit++ - change membrane fluctuation amplitude for individual cells CompuCell3D

154 views - 5 years ago

Twedit++ - cell count code simplification

Twedit++ - cell count code simplification CompuCell3D

320 views - 5 years ago

Twedit++ - adding new cell type. Modifying Contact energy plugin

Twedit++ - adding new cell type. Modifying Contact energy plugin CompuCell3D

190 views - 5 years ago

Twedit++ - generating code that counts cells of given type

Twedit++ - generating code that counts cells of given type CompuCell3D

197 views - 5 years ago

Twedit++ - writing your first steppable - iteration over cells

Twedit++ - writing your first steppable - iteration over cells CompuCell3D

355 views - 5 years ago

Twedit++ zip/unzip CC3D Projects

Twedit++ zip/unzip CC3D Projects CompuCell3D

301 views - 5 years ago

Part 3 Sequence Types

Part 3 Sequence Types CompuCell3D

38 views - 5 years ago

Part 6 - Numerics & Plotting

Part 6 - Numerics & Plotting CompuCell3D

46 views - 5 years ago

Part 2 - Branching, Iteration

Part 2 - Branching, Iteration CompuCell3D

88 views - 5 years ago

Intro - Why python? Basic Tellurium, CompuCell3D, and python examples

Intro - Why python? Basic Tellurium, CompuCell3D, and python examples CompuCell3D

301 views - 5 years ago

Part 4 Tuples, Lists, Aliasing, Mutability, Cloning

Part 4 Tuples, Lists, Aliasing, Mutability, Cloning CompuCell3D

129 views - 5 years ago

Part 5 - Basic Functions

Part 5 - Basic Functions CompuCell3D

44 views - 5 years ago

Using Twedit++ to generate CC3D simulation

Using Twedit++ to generate CC3D simulation CompuCell3D

762 views - 5 years ago

Modifying simulation using Twedit++

Modifying simulation using Twedit++ CompuCell3D

110 views - 5 years ago

Installing CC3D on Mac OSX

Installing CC3D on Mac OSX CompuCell3D

1.5K views - 5 years ago

COVID-19 Part II - Day 2: Miniworkshop on CompuCell3D Virtual-Tissue Simulations of Infection

COVID-19 Part II - Day 2: Miniworkshop on CompuCell3D Virtual-Tissue Simulations of Infection CompuCell3D

54 views - 5 years ago

COVID-19 Part II - Day 1: Miniworkshop on CompuCell3D Virtual-Tissue Simulations of Infection

COVID-19 Part II - Day 1: Miniworkshop on CompuCell3D Virtual-Tissue Simulations of Infection CompuCell3D

127 views - 5 years ago

COVID-19 Part I - Day 2: Miniworkshop on CompuCell3D Virtual-Tissue Simulations of Infection

COVID-19 Part I - Day 2: Miniworkshop on CompuCell3D Virtual-Tissue Simulations of Infection CompuCell3D

192 views - 5 years ago

COVID-19 Part I - Day 1: Miniworkshop on CompuCell3D Virtual-Tissue Simulations of Infection

COVID-19 Part I - Day 1: Miniworkshop on CompuCell3D Virtual-Tissue Simulations of Infection CompuCell3D

436 views - 5 years ago

Modelling COVID-19 Infection and Immune Response Using Virtual Tissues (CompuCell3D)

Modelling COVID-19 Infection and Immune Response Using Virtual Tissues (CompuCell3D) CompuCell3D

457 views - 5 years ago

CompuCell3D: Simulation of tissue response to COVID-19 acute viral infection and immune response

CompuCell3D: Simulation of tissue response to COVID-19 acute viral infection and immune response CompuCell3D

394 views - 5 years ago

Saving screenshots during VTK file replay using CC3D Player

Saving screenshots during VTK file replay using CC3D Player CompuCell3D

704 views - 11 years ago

Saving VTK files using CC3D Player

Saving VTK files using CC3D Player CompuCell3D

706 views - 11 years ago

Generating CC3D C++ module in the Developer Zone

Generating CC3D C++ module in the Developer Zone CompuCell3D

396 views - 11 years ago

Basics Of CompuCell3D Player

Basics Of CompuCell3D Player CompuCell3D

2.5K views - 11 years ago